种田农民

Name

Link

Description

Maizegdb

http://www.maizegdb.org/

Maizegdb is the community database
for biological information about the crop plant zea mays ssp. Mays.
Genetic, genomic, sequence, gene product, functional
characterization, literature reference, and person/organization
contact information are among the datatypes accessible through this
site.

MAGI

http://magi.plantgenomics.iastate.edu/

Maize assembled genomic island
reports the results of a maize genome assembly project being
conducted by the aluru, ashlock and schnable research
groups

Gramene

http://www.gramene.org/

A resource for comparative grass
genomics including: genomes, protein, maps, markers,traits,
genetics diversity, bochemical pathway, literature etc.

Maizesequence

http://www.maizesequence.org/index.html

This site provides sequence and
annotation of the zea mays ssp. Mays genome resulting from the
maize genome sequencing project.

mtmDB

http://mtm.cshl.edu/

Mtmdb is a transposon library in
maize for the purpose of targeted selection of gene
knockouts

Maize tilling

http://genome.purdue.edu/maizetilling/

Maize tilling project that collect
and distribute maize tilling mutant and seeds

NCBI Maize

http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=4577

Provide all of the accessions from
zea mays including: genomics, cdna, est, gss,htg
sequences

SAM

http://sam.truman.edu/

Maize shoot apical meristem
expression database

Helitons

http://genomecluster.secs.oakland.edu/helitrons/

Catalog of discovered
helitrons

Grassius

http://www.grassius.org/

Grassius provides a collection of
databases for transcription factors (grasstfdb), promoters and
cis-regulatory elements (grasspromdb) across the grasses, including
maize, sugarcane, sorghum and rice.

Panzea

http://www.panzea.org/

Database of molecular and
functional diversity of the maize genome

MaizePLEX

http://www.plexdb.org/plex.php?database=Corn

Maizeplex is a miame-compliant and
plant ontology enhanced expression database for maize microarray
data.

TIGR Maize

http://maize.tigr.org/

Provides links to the nsf-funded
consortium for maize genomics project and includes sequence,
assembly and annotation data and links to the maize gene
index.

MaizecDNA

http://www.maizecdna.org/

Realesed 30000 FLcDNA from diverse
B73 tissues samples

ZmGDB

http://www.plantgdb.org/ZmGDB/

Provide a convenient
sequence-centered genome view for zea mays, with a narrow focus on
gene structure annotation.

PML

http://chloroplast.uoregon.edu/

A genetic resource in maize that
is tailored for studies of chloroplast biogenesis

VPhenoDBS

http://medbio.cecs.missouri.edu/VPhenoDBS/

Web-based visual phenotypic
information management system to allow simultaneously query
phenotype data by image example, sequence, ontology, genetic and
physical map information, and text annotations

Name

Link

Description

MetaQTL

http://bioinformatics.org/mqtl/

Metaqtl is a java package designed
to perform the integration of data from the field of gene mapping
experiments

BioMercator

http://cms.moulon.inra.fr/index.php?option=com_content&task=view&id=13&Itemid=43

Genetic maps and QTL
integration

CMTV

http://www.ncgr.org/cmtv/

An integrated bioinformatic tool
to construct consensus maps and compare QTL and functional genomics
data across genomes and experiments

QTL-Finder

http://gqtl.maizecenter.cn

QTL-Finder: a bioinformatics tool
for QTL integration, comparison and candidate gene discovery across
genomes and experiments

TWINSCAN

http://mblab.wustl.edu/query.html

Improved gene prediction
performance for maize and rice

GDPC

http://www.maizegenetics.net/gdpc/index.html

The genomic diversity and
phenotype connection (GDPC) simplifies access to genomic diversity
and phenotype data, thereby encouraging reuse of this data. GDPC
accomplishes this by retrieving data from one or more data sources
and by allowing researchers to analyze integrated data in a
standard format. GDPC provides access to genomic diversity data
such as SNPs, SSRs, sequences, etc. And phenotypic data that may be
collected in field, genetic, or physiological
experiments.

TASSEL

http://www.maizegenetics.net/index.php?page=bioinformatics/tassel/index.html

TASSEL is a software package to
evaluate traits associations, evolutionary patterns, and linkage
disequilibrium.

PowerMarker

http://statgen.ncsu.edu/powermarker/

PowerMarker is a comprehensive set
of statistical methods for genetic marker data analysis, designed
especially for SSR/SNP data analysis.

RepMiner

http://jestill.myweb.uga.edu/RepMiner.htm

The RepMiner package takes a graph
theory approach to the identification and assembly of transposable
elements from small DNA fragments resulting from subcloning
bacterial artificial chromosome (BAC) libraries.

TE nest

http://bak.public.iastate.edu/te_nest.html

Automated chronological annotation
and visualization of maize nested transposable elements